The graph below was generated by SBML2TikZ using the SingleGeneVariant2.xml file written for JDesigner by Herbert Sauro.
PGF/TikZ Output
\documentclass{article}
\usepackage{tikz}
\usepackage{pgf}
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\pagestyle{empty}
\begin{document}
\begin{center}
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{
% List of colors used:
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\definecolor{Color_1}{RGB}{0,0,0};
\definecolor{Color_2}{RGB}{255,102,0};
% List of gradients used:
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% LineEnding for RNAP
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% LineEnding for P
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% Curve for P
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(-0.5pt,0pt)--(1.5pt,10pt);
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% Group for J1
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% Group for J2
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% LineEnding for mRNAnuc
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% Polygon for mRNAnuc
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% LineEnding for RNAP
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% Ellipses for RNAP
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% Group for J3
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% LineEnding for mRNAcyt
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% Polygon for mRNAcyt
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(0pt,0pt)--(10pt,5pt)--(0pt,10pt)--(3.3pt,5pt)--(0pt, 0pt) -- cycle;
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% Group for J4
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% LineEnding for RNAcyt
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% Polygon for RNAcyt
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(0pt,0pt)--(10pt,5pt)--(0pt,10pt)--(3.3pt,5pt)--(0pt, 0pt) -- cycle;
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% Group for J5
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% LineEnding for RNAnuc
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% Polygon for RNAnuc
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\draw [line width = 5pt, color = Color_2!100, fill = Color_2!100 ]
(0pt,0pt)--(10pt,5pt)--(0pt,10pt)--(3.3pt,5pt)--(0pt, 0pt) -- cycle;
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% Group for J6
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% LineEnding for P
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% Polygon for P
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(0pt,0pt)--(10pt,5pt)--(0pt,10pt)--(3.3pt,5pt)--(0pt, 0pt) -- cycle;
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% LineEnding for mRNAcyt
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% Ellipses for mRNAcyt
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% Group for J7
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% LineEnding for AA
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% Polygon for AA
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(0pt,0pt)--(10pt,5pt)--(0pt,10pt)--(3.3pt,5pt)--(0pt, 0pt) -- cycle;
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{
% Rectangle for RNAP
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\draw[line width = 2pt, color = Color_0!100, rounded corners = 5pt ] \wholeShape;
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{
% Rectangle for RNAnuc
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\def \wholeShape {(0pt,0pt) rectangle(50pt,34pt)}
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\draw[line width = 2pt, color = Color_0!100, rounded corners = 5pt ] \wholeShape;
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% Rectangle for mRNAnuc
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\def \wholeShape {(0pt,0pt) rectangle(62pt,34pt)}
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\draw[line width = 2pt, color = Color_0!100, rounded corners = 5pt ] \wholeShape;
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% Rectangle for mRNAcyt
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\def \wholeShape {(0pt,0pt) rectangle(59pt,34pt)}
\fill[rounded corners = 5pt, shading = LinearGradient_0, shading angle = -180 ] \wholeShape;
\draw[line width = 2pt, color = Color_0!100, rounded corners = 5pt ] \wholeShape;
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% Rectangle for RNAcyt
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\def \wholeShape {(0pt,0pt) rectangle(50pt,34pt)}
\fill[rounded corners = 5pt, shading = LinearGradient_0, shading angle = -180 ] \wholeShape;
\draw[line width = 2pt, color = Color_0!100, rounded corners = 5pt ] \wholeShape;
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% Rectangle for AA
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\draw[line width = 2pt, color = Color_0!100, rounded corners = 5pt ] \wholeShape;
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% Rectangle for P
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% Rectangle for Src
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% Rectangle for Waste
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\def \wholeShape {(0pt,0pt) rectangle(50pt,34pt)}
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\draw[line width = 3pt, color = Color_1!100, rounded corners = 5pt ] \wholeShape;
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% Group for sGlyph_0
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% Group for sGlyph_1
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% Group for sGlyph_2
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% Group for sGlyph_3
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% Group for sGlyph_4
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% Group for sGlyph_5
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% Group for sGlyph_6
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% Group for sGlyph_7
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% Group for sGlyph_8
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}
}
\end{tikzpicture}
\end{center}
\end{document}