The graph below shows a pathway for Calcium/Calmodulin dependent kinase activation drawn by
Ralph Gauges himself. SBML2TikZ is capable of rendering anything stored in the SBML render extension, including hand-drawn diagrams like the one here. (Note: There is a known error displaying this page in FireFox; the graph simply does not show up. Internet Explorer and Google Chrome display the page correctly.)
PGF/TikZ Output
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% Curve for species_8
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% Curve for species_8
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% Text for species_8
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% Curve for species_2
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% Curve for species_2
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% Curve for species_2
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% Curve for species_3
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% Curve for species_3
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% Curve for species_3
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{
% Curve for species_3
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{
% Curve for species_3
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{
% Ellipses for species_3
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{
% Ellipses for species_3
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{
% Ellipses for species_3
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{
% Ellipses for species_3
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% Curve for species_6
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% Curve for species_6
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% Curve for species_6
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{
% Curve for species_6
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{
% Curve for species_6
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% Curve for species_6
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% Ellipses for species_6
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}
{
% Ellipses for species_6
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}
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% Ellipses for species_6
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}
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% Ellipses for species_6
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\def \wholeShape {(330pt,47pt) ellipse(5pt and 5pt)}
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\draw[line width = 1pt, color = black!100 ] \wholeShape;
}
{
% Ellipses for species_6
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\def \wholeShape {(350pt,50pt) ellipse(5pt and 5pt)}
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\draw[line width = 1pt, color = black!100 ] \wholeShape;
}
{
% Text for species_6
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}
{
% Text for speciesGlyph_species9
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}
{
% Text for speciesGlyph_species9
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}
{
% Rectangle for speciesGlyph_species5
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\def \wholeShape {(0pt,0pt) rectangle(55pt,24pt)}
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\draw[line width = 1pt, color = red!100 ] \wholeShape;
}
{
% Text for speciesGlyph_species5
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}
{
% Rectangle for speciesGlyph_species7
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\def \wholeShape {(0pt,0pt) rectangle(55pt,24pt)}
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}
{
% Text for speciesGlyph_species7
\draw (687.6621pt, 763.082pt) node[text = red!100, font = \fontsize{ 18 } { 18 }\fontfamily\sfdefault\selectfont] { ADP };
}
{
% Text for speciesGlyph_species0_1
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}
{
% Text for speciesGlyph_species0_1
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}
{
% Text for speciesGlyph_species0_2
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}
{
% Text for speciesGlyph_species0_2
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}
{
% Group for speciesGlyph_species8
\draw (540pt, 225pt) node[text = black!100, font = \fontsize{ 18 } { 18 }\fontfamily\sfdefault\selectfont] { Ca2+-INDEPENDENT };
}
{
% Group for speciesGlyph_species8
\draw (540pt, 255pt) node[text = black!100, font = \fontsize{ 18 } { 18 }\fontfamily\sfdefault\selectfont] { (50-80\% ACTIVE) };
}
{
% Group for reactionGlyph_reaction4
\draw (660pt, 102pt) node[text = black!100, font = \fontsize{ 12 } { 12 }\fontfamily\sfdefault\selectfont] { protein };
}
{
% Group for reactionGlyph_reaction4
\draw (660pt, 126pt) node[text = black!100, font = \fontsize{ 12 } { 12 }\fontfamily\sfdefault\selectfont] { phosphatase };
}
{
% Group for speciesGlyph_species4
\draw (1210pt, 215pt) node[text = black!100, font = \fontsize{ 18 } { 18 }\fontfamily\sfdefault\selectfont] { INACTIVE };
}
{
% Group for speciesGlyph_species1
\draw (515pt, 512pt) node[text = black!100, font = \fontsize{ 12 } { 12 }\fontfamily\sfdefault\selectfont] { calmodulin };
}
{
% Group for speciesGlyph_species2
\draw (915pt, 512pt) node[text = black!100, font = \fontsize{ 12 } { 12 }\fontfamily\sfdefault\selectfont] { Ca2+/calmodulin };
}
{
% Group for speciesGlyph_species6
\draw (480pt, 865pt) node[text = black!100, font = \fontsize{ 18 } { 18 }\fontfamily\sfdefault\selectfont] { FULLY };
}
{
% Group for speciesGlyph_species6
\draw (480pt, 895pt) node[text = black!100, font = \fontsize{ 18 } { 18 }\fontfamily\sfdefault\selectfont] { ACTIVE };
}
{
% Group for speciesGlyph_species3
\draw (1100pt, 875pt) node[text = black!100, font = \fontsize{ 18 } { 18 }\fontfamily\sfdefault\selectfont] { ACTIVATED };
}
{
% Group for reactionGlyph_reaction2
\draw (725pt, 912pt) node[text = black!100, font = \fontsize{ 12 } { 12 }\fontfamily\sfdefault\selectfont] { auto- };
}
{
% Group for reactionGlyph_reaction2
\draw (725pt, 936pt) node[text = black!100, font = \fontsize{ 12 } { 12 }\fontfamily\sfdefault\selectfont] { phosphorylation };
}
{
% Group for speciesGlyph_species0_1
\draw (707.5pt, 475pt) node[text = black!100, font = \fontsize{ 18 } { 18 }\fontfamily\sfdefault\selectfont] { + };
}
{
% Group for speciesGlyph_species8
}
{
% Group for speciesGlyph_species4
}
{
% Group for speciesGlyph_species3
}
{
% Group for speciesGlyph_species6
}
{
% Group for speciesGlyph_species9
}
{
% Group for speciesGlyph_species0_1
}
{
% Group for speciesGlyph_species5
}
{
% Group for speciesGlyph_species7
}
{
% Group for speciesGlyph_species0_2
}
}
\end{tikzpicture}
\end{center}
\end{document}